STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1142Hypothetical protein; KEGG: bld:BLi01096 YhgE. (351 aa)    
Predicted Functional Partners:
Cthe_1143
KEGG: hypothetical protein.
  
    0.796
Cthe_1141
KEGG: cyn:Cyan7425_5294 hypothetical protein.
  
    0.794
Cthe_1139
KEGG: cyn:Cyan7425_5296 hypothetical protein.
  
    0.793
Cthe_1140
Hypothetical protein; KEGG: nvi:100124250 similar to Wiskott-Aldrich syndrome.
  
    0.786
Cthe_1136
PFAM: Serine/threonine-protein kinase-like domain; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: cyn:Cyan7425_5270 serine/threonine protein kinase.
  
    0.753
Cthe_1137
KEGG: cyn:Cyan7425_5269 hypothetical protein.
  
    0.746
Cthe_1138
PFAM: HerA-ATP synthase, barrel domain; KEGG: efe:EFER_3096 putative nucleoside triphosphate hydrolase.
  
    0.745
Cthe_1144
PFAM: restriction modification system DNA specificity domain; KEGG: mfe:Mefer_0543 N-6 DNA methylase.
  
    0.710
Cthe_1145
PFAM: N-6 DNA methylase; KEGG: pag:PLES_23591 hypothetical protein.
       0.660
Cthe_1146
KEGG: cyn:Cyan7425_5289 hypothetical protein.
  
    0.656
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.