STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1207KEGG: msi:Msm_1288 hypothetical protein. (507 aa)    
Predicted Functional Partners:
Cthe_1235
KEGG: pjd:Pjdr2_1173 S-layer domain protein; PFAM: PKD domain containing protein; Fibronectin type III domain protein; Cna B domain protein; Hyalin; S-layer domain-containing protein; SMART: PKD domain containing protein; Fibronectin type III domain protein.
  
     0.757
Cthe_2353
PFAM: Ig domain protein group 1 domain protein; KEGG: alv:Alvin_3300 lipase, class 2.
  
     0.736
Cthe_1806
SMART: Ig domain protein group 2 domain protein; KEGG: cce:Ccel_1547 S-layer domain protein.
  
     0.734
Cthe_1911
KEGG: cce:Ccel_1656 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; S-layer domain-containing protein; SMART: cellulose binding type IV.
  
    0.734
Cthe_0205
KEGG: dae:Dtox_3947 hypothetical protein.
  
     0.701
Cthe_1257
Carbohydrate-binding CenC domain protein; KEGG: csc:Csac_1076 glycoside hydrolase family protein; PFAM: Carbohydrate-binding CenC domain protein; type 3a cellulose-binding domain protein; SMART: von Willebrand factor type A.
  
     0.678
Cthe_2879
PFAM: Dockerin type 1; KEGG: scl:sce4860 hypothetical protein.
  
     0.650
Cthe_2383
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_3336 hypothetical protein.
  
    0.635
Cthe_0135
PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase.
  
     0.606
Cthe_0628
Hypothetical protein; KEGG: aau:AAur_3162 putative cell surface polysaccharide biosynthesis.
  
    0.602
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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