STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1234KEGG: tme:Tmel_0749 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer. (256 aa)    
Predicted Functional Partners:
Cthe_1233
KEGG: hypothetical protein.
 
    0.951
Cthe_0491
KEGG: cce:Ccel_2026 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 
 0.906
Cthe_0490
KEGG: cce:Ccel_2027 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; P2 response regulator binding domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein.
 
 
 0.905
Cthe_0810
KEGG: dae:Dtox_0611 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein.
 
 
 0.902
Cthe_2818
KEGG: cbe:Cbei_4183 CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein.
 
 
 0.901
Cthe_2284
KEGG: cbe:Cbei_4183 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; P2 response regulator binding domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein.
 
 
 0.900
Cthe_0080
KEGG: ate:Athe_2102 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 
 0.888
Cthe_0878
KEGG: cce:Ccel_0588 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 
 0.887
Cthe_2817
CheW protein; KEGG: cbe:Cbei_4184 putative CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 
 0.884
Cthe_2285
CheW protein; KEGG: cbe:Cbei_4184 putative CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
 
 0.874
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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