STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1415KEGG: cbi:CLJ_B3630 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (286 aa)    
Predicted Functional Partners:
ecfA1
ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
0.909
Cthe_1414
KEGG: cbi:CLJ_B3629 putative lipoprotein.
  
 
 0.898
Cthe_1413
KEGG: cbi:CLJ_B3629 putative lipoprotein.
 
    0.892
Cthe_2707
KEGG: cce:Ccel_0296 ABC-2 type transporter.
 
 0.844
Cthe_1572
KEGG: ckr:CKR_1909 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     
0.831
Cthe_1416
Hypothetical protein; KEGG: mmw:Mmwyl1_2194 translocation protein TolB.
  
    0.793
Cthe_1417
KEGG: mae:Maeo_0429 hypothetical protein.
  
    0.742
Cthe_1418
KEGG: lsp:Bsph_3575 hypothetical protein.
  
    0.741
Cthe_3067
KEGG: ctc:CTC01492 membrane spanning protein.
 
 
 0.701
Cthe_1535
KEGG: ckr:CKR_2198 hypothetical protein.
 
 
 0.681
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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