STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifHNitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (284 aa)    
Predicted Functional Partners:
Cthe_1565
PFAM: oxidoreductase/nitrogenase component 1; KEGG: ckr:CKR_0741 hypothetical protein; Belongs to the NifD/NifK/NifE/NifN family.
 0.999
Cthe_1566
PFAM: oxidoreductase/nitrogenase component 1; KEGG: cbe:Cbei_0621 nitrogenase.
 
 0.998
Cthe_1568
KEGG: fsu:Fisuc_1076 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.948
Cthe_0196
PFAM: Glutamine synthetase type III-like; glutamine synthetase catalytic region; KEGG: glutamine synthetase catalytic region.
     
 0.945
Cthe_1567
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cbe:Cbei_0627 dinitrogenase iron-molybdenum cofactor biosynthesis protein.
 
  
 0.940
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.930
Cthe_0202
KEGG: dhd:Dhaf_0994 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.
   
 
 0.929
Cthe_1499
KEGG: afw:Anae109_3636 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter; nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
  
 0.911
Cthe_0374
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: cce:Ccel_2430 Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.910
Cthe_0863
PFAM: glutamine synthetase catalytic region; KEGG: tpd:Teth39_1666 glutamine synthetase, catalytic region.
     
  0.900
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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