STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1640KEGG: hmo:HM1_2892 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Cthe_1639
KEGG: hmo:HM1_2891 DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.934
Cthe_1638
KEGG: hmo:HM1_2890 DNA methylase, family protein; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.931
Cthe_1636
KEGG: hmo:HM1_2887 hypothetical protein.
 
    0.921
Cthe_1641
KEGG: tex:Teth514_1241 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.
 
    0.915
Cthe_1637
KEGG: hmo:HM1_2889 hypothetical protein.
 
    0.885
Cthe_1628
TIGRFAM: phage major capsid protein, HK97 family; KEGG: hmo:HM1_2880 phage major capsid protein, hk97 family.
 
    0.868
Cthe_1629
PFAM: peptidase S14 ClpP; KEGG: hmo:HM1_2881 peptidase S14, ClpP; Belongs to the peptidase S14 family.
 
    0.862
Cthe_1630
KEGG: hmo:HM1_2882 phage portal protein, hk97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
    0.826
Cthe_1626
PFAM: head-tail joining family protein; KEGG: hmo:HM1_2878 phage head-tail adaptor, putative.
 
    0.823
Cthe_1624
KEGG: hmo:HM1_2876 hypothetical protein.
 
    0.812
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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