STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1678PFAM: transferase hexapeptide repeat containing protein; KEGG: gym:GYMC10_3462 hypothetical protein. (211 aa)    
Predicted Functional Partners:
Cthe_1680
PFAM: DNA polymerase beta domain protein region; KEGG: gtn:GTNG_0310 hypothetical protein.
  
    0.698
Cthe_1679
PFAM: Methyltransferase type 11; KEGG: pdi:BDI_3911 putative methyltransferase.
  
  
 0.638
Cthe_1349
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: gur:Gura_3177 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase.
  
  
 0.600
Cthe_0135
PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase.
  
  
 0.511
Cthe_1677
PFAM: Abortive infection protein; KEGG: ckr:CKR_2310 hypothetical protein.
  
  
 0.490
Cthe_1904
KEGG: hau:Haur_3129 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; major facilitator superfamily MFS_1; condensation domain protein; Thioesterase; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.447
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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