STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1695KEGG: dth:DICTH_0222 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (491 aa)    
Predicted Functional Partners:
Cthe_1696
KEGG: ere:EUBREC_3374 hypothetical protein.
 
    0.835
Cthe_1694
KEGG: pyo:PY01937 hypothetical protein.
  
    0.780
Cthe_1707
TIGRFAM: phage minor structural protein; KEGG: phage minor structural protein.
  
    0.777
Cthe_1161
KEGG: rsd:TGRD_477 hypothetical protein.
  
    0.773
Cthe_1708
KEGG: phage tail component; TIGRFAM: phage tail component; PFAM: tail component family protein.
  
    0.767
Cthe_1746
KEGG: sak:SAK_0723 hypothetical protein.
  
    0.751
Cthe_1684
PFAM: transposase IS3/IS911 family protein; KEGG: gtn:GTNG_3490 IS1477 transposase.
  
    0.726
Cthe_1719
TIGRFAM: phage major capsid protein, HK97 family; KEGG: dae:Dtox_3666 major capsid protein HK97.
  
    0.711
Cthe_1743
PFAM: protein of unknown function DUF955; KEGG: sak:SAK_0723 hypothetical protein.
  
    0.703
Cthe_1709
Hypothetical protein; KEGG: chy:CHY_1662 putative prophage LambdaCh01, tail tape measure protein.
  
    0.684
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.