STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1710PFAM: protein of unknown function DUF710; KEGG: cbb:CLD_2067 hypothetical protein. (107 aa)    
Predicted Functional Partners:
Cthe_1714
KEGG: cba:CLB_2966 hypothetical protein.
  
    0.767
Cthe_1708
KEGG: phage tail component; TIGRFAM: phage tail component; PFAM: tail component family protein.
  
    0.590
Cthe_1711
KEGG: dhd:Dhaf_0958 hypothetical protein.
  
    0.580
Cthe_1715
TIGRFAM: phage protein, HK97 gp10 family; KEGG: cbf:CLI_3264 HK97 family phage protein.
  
    0.557
Cthe_1706
KEGG: det:DET1075 hypothetical protein.
  
    0.535
Cthe_1707
TIGRFAM: phage minor structural protein; KEGG: phage minor structural protein.
  
    0.530
Cthe_1705
KEGG: bph:Bphy_1259 hypothetical protein.
  
    0.515
Cthe_1709
Hypothetical protein; KEGG: chy:CHY_1662 putative prophage LambdaCh01, tail tape measure protein.
  
    0.514
Cthe_1704
KEGG: cce:Ccel_2819 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis.
  
    0.475
Cthe_1713
TIGRFAM: phage major tail protein, phi13 family; KEGG: cpe:CPE1127 hypothetical protein.
  
    0.457
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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