STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1737KEGG: cbb:CLD_2430 phage NTP-binding protein. (530 aa)    
Predicted Functional Partners:
Cthe_1739
PFAM: SNF2-related protein; helicase domain protein; KEGG: cbb:CLD_2423 phage helicase.
 
     0.949
Cthe_1734
TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: cbb:CLD_2436 phage primase; SMART: primase P4.
 
    0.880
Cthe_1742
KEGG: tde:TDE0660 transcriptional regulator, putative.
 
   
 0.866
Cthe_1740
Prophage antirepressor; PFAM: BRO domain protein; KEGG: btl:BALH_p0023 antirepressor, phage associated.
 
   
 0.860
Cthe_1736
PFAM: protein of unknown function DUF669; KEGG: cbb:CLD_2432 hypothetical protein.
       0.793
Cthe_1738
PFAM: VRR-NUC domain-containing protein; KEGG: lsl:LSL_0755 hypothetical protein.
       0.788
Cthe_1735
PFAM: DNA polymerase B region; KEGG: cbb:CLD_2434 phage DNA polymerase.
       0.748
Cthe_1732
KEGG: det:DET0070 hypothetical protein.
 
     0.652
Cthe_1724
KEGG: hypothetical protein.
  
     0.648
Cthe_2479
KEGG: cbk:CLL_A1913 prophage protein.
  
     0.562
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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