STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1836KEGG: dae:Dtox_1722 hypothetical protein. (322 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.660
Cthe_0889
Hypothetical protein; KEGG: putative transmembrane anti-sigma factor.
  
 
 0.652
Cthe_2671
Transposase mutator type; Required for the transposition of the insertion element.
   
  
 0.613
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.612
Cthe_0291
KEGG: cac:CAC3546 hypothetical protein.
      
 0.603
Cthe_0531
KEGG: pfh:PFHG_00005 hypothetical protein similar to 1 beta dynein heavy chain.
      
 0.603
Cthe_2670
Hypothetical protein; KEGG: ate:Athe_2571 transglutaminase domain protein.
      
 0.603
Cthe_1202
PFAM: major facilitator superfamily MFS_1; KEGG: tte:TTE2499 major facilitator superfamily permease.
   
  
 0.554
Cthe_0360
Thioredoxin; KEGG: cce:Ccel_2211 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; Belongs to the thioredoxin family.
      
 0.547
Cthe_0305
KEGG: cce:Ccel_1398 DNA gyrase subunit B domain protein; PFAM: DNA gyrase subunit B domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II.
   
  
 0.533
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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