STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1899Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: shi:Shel_05720 D-alanyl-D-alanine carboxypeptidase; PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin. (289 aa)    
Predicted Functional Partners:
Cthe_1760
TIGRFAM: penicillin-binding protein, 1A family; KEGG: cce:Ccel_2876 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
     
 0.911
Cthe_0272
KEGG: nth:Nther_1212 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein.
     
 0.909
Cthe_0679
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: cce:Ccel_1749 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
     
 0.909
Cthe_1171
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cce:Ccel_0520 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.
     
 0.909
Cthe_1231
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cce:Ccel_1370 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.
   
 
 0.909
Cthe_3179
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: cce:Ccel_0487 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
     
 0.909
Cthe_0504
KEGG: capsule synthesis protein, CapA; PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA.
     0.655
ddl
D-alanine/D-alanine ligase; Cell wall formation.
 
   
 0.550
deoD
KEGG: cpy:Cphy_0752 purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1.
  
    0.463
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
     0.410
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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