STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1909PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_2334 copper amine oxidase domain protein. (490 aa)    
Predicted Functional Partners:
Cthe_1908
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_2335 copper amine oxidase domain protein.
 
   
0.838
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.711
Cthe_1911
KEGG: cce:Ccel_1656 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; S-layer domain-containing protein; SMART: cellulose binding type IV.
 
    0.704
Cthe_3188
PFAM: copper amine oxidase-like domain-containing protein; peptidase domain protein; KEGG: cbo:CBO0379 cell surface protein.
  
    0.689
Cthe_1910
KEGG: cce:Ccel_2336 hypothetical protein.
       0.686
Cthe_1932
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0288 hypothetical protein.
  
     0.681
Cthe_2383
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cce:Ccel_3336 hypothetical protein.
  
    0.668
Cthe_1806
SMART: Ig domain protein group 2 domain protein; KEGG: cce:Ccel_1547 S-layer domain protein.
  
     0.664
Cthe_0402
PFAM: copper amine oxidase-like domain-containing protein; KEGG: cpo:COPRO5265_0075 anion ABC transporter, anion-binding protein.
  
    0.660
Cthe_1235
KEGG: pjd:Pjdr2_1173 S-layer domain protein; PFAM: PKD domain containing protein; Fibronectin type III domain protein; Cna B domain protein; Hyalin; S-layer domain-containing protein; SMART: PKD domain containing protein; Fibronectin type III domain protein.
 
  
 0.642
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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