STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1933KEGG: tpd:Teth39_0191 Zn-dependent hydrolase of the beta-lactamase fold-like protein. (211 aa)    
Predicted Functional Partners:
Cthe_1934
PFAM: Abortive infection protein; KEGG: ckr:CKR_0665 hypothetical protein.
  
    0.575
Cthe_0135
PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase.
  
  
 0.567
argS
TIGRFAM: arginyl-tRNA synthetase; KEGG: cce:Ccel_0285 arginyl-tRNA synthetase.
       0.525
Cthe_0405
PFAM: glycoside hydrolase family 5; Dockerin type 1; KEGG: csc:Csac_1078 cellulose 1,4-beta-cellobiosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
    0.504
celG
Glycoside hydrolase family 5; This enzyme catalyzes the endohydrolysis of 1,4-beta- glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
    0.504
Cthe_1936
PFAM: Domain of unknown function DUF1934; KEGG: cce:Ccel_0284 hypothetical protein.
  
    0.499
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
 
    0.472
Cthe_2147
PFAM: glycoside hydrolase family 5; Dockerin type 1; type 3a cellulose-binding domain protein; KEGG: csc:Csac_1078 cellulose 1,4-beta-cellobiosidase.
   
    0.464
Cthe_1932
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0288 hypothetical protein.
       0.444
Cthe_1931
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0289 S-layer domain protein.
       0.443
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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