STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2106PFAM: protein of unknown function DUF327; KEGG: cce:Ccel_0158 protein of unknown function DUF327. (150 aa)    
Predicted Functional Partners:
Cthe_2247
KEGG: cce:Ccel_0091 regulatory protein, MerR.
 
    0.786
Cthe_0883
KEGG: cce:Ccel_0091 regulatory protein, MerR.
 
    0.782
Cthe_2245
PFAM: FlgN family protein; KEGG: cce:Ccel_0093 FlgN family protein.
 
     0.777
Cthe_0478
KEGG: cce:Ccel_2038 CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein.
 
  
 0.755
Cthe_0488
PFAM: type IV pilus assembly PilZ; KEGG: tpd:Teth39_1234 type IV pilus assembly PilZ.
  
    0.750
Cthe_2246
KEGG: cce:Ccel_0092 anti-sigma-28 factor FlgM family protein; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein.
 
 
   0.745
Cthe_1061
PFAM: Protein of unknown function DUF2225; KEGG: cce:Ccel_1682 hypothetical protein.
 
    0.730
Cthe_0498
PFAM: protein of unknown function DUF342; KEGG: cce:Ccel_2021 protein of unknown function DUF342.
  
    0.727
Cthe_2104
PFAM: PSP1 domain protein; KEGG: cce:Ccel_0160 PSP1 domain protein.
  
  
 0.726
Cthe_0760
KEGG: cce:Ccel_0718 hypothetical protein.
 
     0.721
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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