STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2216PFAM: FlgN family protein; KEGG: cce:Ccel_0107 FlgN family protein. (162 aa)    
Predicted Functional Partners:
Cthe_2217
KEGG: cce:Ccel_0106 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS.
  
  
 0.835
Cthe_2219
PFAM: flagellar protein FlaG protein; KEGG: cce:Ccel_0104 flagellar protein FlaG protein.
 
    0.790
Cthe_2695
KEGG: cce:Ccel_2928 hypothetical protein.
  
    0.753
Cthe_2091
KEGG: cce:Ccel_0172 hypothetical protein.
  
     0.744
Cthe_0760
KEGG: cce:Ccel_0718 hypothetical protein.
  
    0.731
Cthe_0793
KEGG: cce:Ccel_0595 hypothetical protein.
  
     0.729
Cthe_2712
PFAM: Colicin V production protein; KEGG: cce:Ccel_0301 hypothetical protein.
  
     0.729
Cthe_2218
Flagellar hook-associated 2 domain-containing protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.719
Cthe_1931
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0289 S-layer domain protein.
  
     0.696
Cthe_1932
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0288 hypothetical protein.
  
     0.693
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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