STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2290KEGG: ate:Athe_0677 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (226 aa)    
Predicted Functional Partners:
Cthe_1819
TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; KEGG: pjd:Pjdr2_0561 UreA ABC transporter, ATP-binding protein UrtE; SMART: AAA ATPase.
 
    
0.825
Cthe_2291
KEGG: ddf:DEFDS_1638 hypothetical protein.
  
    0.778
Cthe_2289
KEGG: tit:Thit_0803 hypothetical protein.
  
    0.777
Cthe_2292
KEGG: hypothetical protein.
       0.732
Cthe_3067
KEGG: ctc:CTC01492 membrane spanning protein.
 
 
 0.717
Cthe_2707
KEGG: cce:Ccel_0296 ABC-2 type transporter.
 
 
 0.656
Cthe_1535
KEGG: ckr:CKR_2198 hypothetical protein.
  
 
 0.609
Cthe_1414
KEGG: cbi:CLJ_B3629 putative lipoprotein.
  
 
 0.607
atpD-2
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.539
atpA-2
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
 
 0.518
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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