STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2387KEGG: cbi:CLJ_B1489 zinc carboxypeptidase family protein; PFAM: peptidase M14 carboxypeptidase A; Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding lysin domain; SMART: peptidase M14 carboxypeptidase A; Peptidoglycan-binding LysM. (423 aa)    
Predicted Functional Partners:
Cthe_2350
PFAM: cell wall hydrolase SleB; KEGG: cno:NT01CX_1338 cell wall hydrolase; cortex lytic enzyme, putative.
 
  
 0.786
Cthe_2351
KEGG: cbh:CLC_2819 hypothetical protein.
  
    0.746
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
      0.682
Cthe_2416
KEGG: cce:Ccel_0036 germination protein YpeB; TIGRFAM: germination protein YpeB; PFAM: Propeptide PepSY amd peptidase M4.
 
  
 0.655
Cthe_2389
KEGG: tit:Thit_0041 pro-sigmaK processing inhibitor BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA; PFAM: sigmaK-factor processing regulatory BofA.
 
  
 0.610
Cthe_1450
KEGG: cbh:CLC_0731 hypothetical protein.
  
    0.576
Cthe_2680
Peptidase S41; KEGG: cpy:Cphy_1188 peptidase S41; PFAM: peptidase S41; Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41; Tetratricopeptide repeat.
 
 
 0.543
Cthe_1403
PFAM: FeoA family protein; KEGG: cbt:CLH_1793 hypothetical protein.
  
    0.538
Cthe_1953
Spore cortex-lytic enzyme; KEGG: csc:Csac_1743 cell wall hydrolase, SleB; TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein.
 
  
 0.524
Cthe_1300
KEGG: tex:Teth514_2182 hypothetical protein.
  
    0.513
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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