STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2398TIGRFAM: spore coat protein, CotS family; KEGG: cce:Ccel_0017 spore coat protein, CotS family. (329 aa)    
Predicted Functional Partners:
Cthe_0559
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cce:Ccel_1522 single-strand binding protein/primosomal replication protein N.
  
    0.681
Cthe_2890
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: csc:Csac_0945 putative transcriptional regulator.
  
    0.674
Cthe_2397
KEGG: cpr:CPR_0574 hypothetical protein.
 
    0.601
Cthe_1383
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: cce:Ccel_1448 tetratricopeptide TPR_2.
  
    0.569
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.542
Cthe_1684
PFAM: transposase IS3/IS911 family protein; KEGG: gtn:GTNG_3490 IS1477 transposase.
  
     0.528
Cthe_1856
KEGG: cce:Ccel_2903 small acid-soluble spore protein beta.
  
     0.511
Cthe_3176
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cce:Ccel_0484 small acid-soluble spore protein alpha/beta type.
  
    0.473
Cthe_2402
KEGG: cce:Ccel_0021 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
  
 0.466
Cthe_2419
KEGG: cce:Ccel_0042 primosome, DnaD subunit.
  
     0.450
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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