STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2485KEGG: dhd:Dhaf_1413 phage protein. (348 aa)    
Predicted Functional Partners:
Cthe_2491
PFAM: Phage-like element PBSX protein, XkdS; KEGG: cby:CLM_2642 hypothetical protein.
 
 
 0.999
Cthe_2492
PFAM: Baseplate J family protein; KEGG: dhd:Dhaf_1421 baseplate J family protein.
 
 
 0.994
Cthe_2493
KEGG: bsu:BSU12740 conserved hypothetical protein; putative PBSX prophage protein.
 
 
 0.994
Cthe_2489
KEGG: cbo:CBO1738 phage protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
 
 0.993
Cthe_2486
PFAM: XkdM protein, phage-like element PBSX; KEGG: dhd:Dhaf_1414 phage protein.
 
    0.961
Cthe_2487
PFAM: XkdN-like protein; KEGG: gym:GYMC10_5382 XkdN-like protein.
 
    0.956
Cthe_2490
Phage protein; KEGG: gym:GYMC10_5379 phage protein.
 
    0.908
Cthe_2488
TIGRFAM: phage tape measure protein; KEGG: str:Sterm_1441 phage tape measure protein.
 
    0.905
Cthe_2478
PFAM: minor structural GP20 protein; KEGG: str:Sterm_1430 minor structural GP20 protein.
 
     0.831
Cthe_2475
KEGG: cbi:CLJ_B1814 phage portal protein, SPP1 family; TIGRFAM: phage portal protein, SPP1 family; PFAM: Bacteriophage portal protein, SPP1 Gp6-like.
 
    0.819
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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