STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2505PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; KEGG: cce:Ccel_3000 transcriptional regulator, LacI family. (342 aa)    
Predicted Functional Partners:
Cthe_0117
KEGG: tte:TTE1820 phosphotransferase system, HPr-related proteins; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
  
 
 0.710
Cthe_2735
Phosphotransferase system, phosphocarrier protein HPr; KEGG: cce:Ccel_0806 phosphocarrier, HPr family; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
  
 
 0.709
Cthe_0740
KEGG: cce:Ccel_0724 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein; SMART: regulatory protein GntR HTH.
  
  
 0.675
Cthe_2441
KEGG: pjd:Pjdr2_3763 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR.
  
  
 0.653
Cthe_2504
PFAM: 3D domain-containing protein; KEGG: csc:Csac_0761 3D domain-containing protein.
  
  
 0.643
Cthe_0389
PFAM: PfkB domain protein; KEGG: PfkB domain protein.
 
  
 0.632
Cthe_1777
PFAM: amidohydrolase; KEGG: cce:Ccel_0798 amidohydrolase.
  
  
 0.602
Cthe_0393
KEGG: tit:Thit_1705 periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.589
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
   
   0.580
Cthe_2446
Hypothetical protein; KEGG: rcu:RCOM_2001640 D-allose-binding periplasmic protein precursor, putative.
 
  
 0.577
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.