STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2555TIGRFAM: methyltransferase FkbM family; KEGG: cbk:CLL_A2332 putative methyltransferase FkbM family. (383 aa)    
Predicted Functional Partners:
Cthe_2554
PFAM: glycosyl transferase group 1; KEGG: ppd:Ppro_3344 glycosyl transferase, group 1.
 
  
 0.886
Cthe_2553
KEGG: dhd:Dhaf_4175 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    0.793
Cthe_2552
KEGG: dhd:Dhaf_4172 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    0.724
Cthe_0135
PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase.
  
  
 0.716
Cthe_2551
PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_4173 radical SAM domain protein.
 
    0.709
Cthe_2550
PFAM: glycosyltransferase sugar-binding region containing DXD motif; KEGG: bfr:BF3652 putative glycosyltransferase.
  
    0.600
Cthe_2219
PFAM: flagellar protein FlaG protein; KEGG: cce:Ccel_0104 flagellar protein FlaG protein.
  
   0.584
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
   
 
 0.562
Cthe_2556
PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_4173 radical SAM domain protein.
 
    0.561
Cthe_2557
PFAM: glycosyl transferase family 2; KEGG: dhd:Dhaf_4180 glycosyl transferase family 2.
 
  
 0.546
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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