STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2640TIGRFAM: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; KEGG: hor:Hore_16940 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase. (391 aa)    
Predicted Functional Partners:
Cthe_2641
TIGRFAM: N-acetylneuraminate synthase; KEGG: pmx:PERMA_1627 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein.
 
 0.998
Cthe_2639
PFAM: acylneuraminate cytidylyltransferase; KEGG: tnp:Tnap_0416 acylneuraminate cytidylyltransferase.
  
 0.984
Cthe_2642
TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: ckr:CKR_2187 hypothetical protein.
  
 0.984
Cthe_2643
PFAM: Nucleotidyl transferase; CBS domain containing protein; KEGG: cbt:CLH_1461 nucleotidyl transferase.
 
  
 0.960
Cthe_2645
PFAM: NAD-dependent epimerase/dehydratase; KEGG: cbt:CLH_1449 NAD-dependent epimerase/dehydratase.
 
  
 0.952
Cthe_2644
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cbt:CLH_1450 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.941
Cthe_0390
PFAM: ROK family protein; KEGG: bha:BH1094 transcriptional repressor of the xylose operon.
 
   
 0.917
Cthe_2938
KEGG: ate:Athe_0552 glucokinase, ROK family; TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; ATPase BadF/BadG/BcrA/BcrD type.
 
   
 0.916
Cthe_2340
KEGG: ele:Elen_1917 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.792
Cthe_2229
Pseudaminic acid synthase; SMART: SAF domain protein; TIGRFAM: pseudaminic acid synthase; KEGG: cbi:CLJ_B2947 sialic acid synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein.
 
 
 0.763
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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