STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2664PFAM: ABC-1 domain-containing protein; KEGG: ckr:CKR_3068 hypothetical protein. (573 aa)    
Predicted Functional Partners:
Cthe_1346
KEGG: amt:Amet_2351 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1.
      0.463
Cthe_0135
PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase.
  
 
 0.461
Cthe_2663
KEGG: cce:Ccel_2179 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
  
  
 0.446
Cthe_2154
PFAM: Methyltransferase type 11; KEGG: psl:Psta_1523 methyltransferase type 11.
   
 
 0.445
Cthe_1679
PFAM: Methyltransferase type 11; KEGG: pdi:BDI_3911 putative methyltransferase.
   
 
 0.441
Cthe_1959
PFAM: Methyltransferase type 11; KEGG: cce:Ccel_1149 methyltransferase type 11.
   
 
 0.441
Cthe_2231
KEGG: chu:CHU_2762 methyltransferase; TIGRFAM: pseudaminic acid biosynthesis-associated methylase; PFAM: Methyltransferase type 11.
   
 
 0.441
Cthe_2767
PFAM: Methyltransferase type 12; KEGG: ana:alr3730 hypothetical protein.
   
 
 0.441
Cthe_3162
KEGG: cce:Ccel_2170 SAM dependent methyltransferase.
   
 
 0.441
Cthe_0806
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; KEGG: swo:Swol_1328 signal transduction histidine kinase-like protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.424
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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