STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_2803PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component. (259 aa)    
Predicted Functional Partners:
Cthe_2804
KEGG: cce:Ccel_0435 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.980
Cthe_2802
SMART: extracellular solute-binding protein family 3; KEGG: cce:Ccel_0437 extracellular solute-binding protein family 3.
 
  
 0.972
Cthe_2790
KEGG: mbn:Mboo_0164 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.925
Cthe_2118
KEGG: str:Sterm_2066 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.907
Cthe_1572
KEGG: ckr:CKR_1909 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.906
Cthe_2789
SMART: extracellular solute-binding protein family 3; KEGG: geo:Geob_2534 extracellular solute-binding protein family 3.
 
  
 0.893
Cthe_1570
SMART: extracellular solute-binding protein family 3; KEGG: cbe:Cbei_0604 NMT1/THI5-like protein.
 
  
 0.844
Cthe_2573
KEGG: dsy:DSY3395 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.828
Cthe_2801
TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; KEGG: cce:Ccel_0438 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.
 
    0.802
Cthe_2117
KEGG: str:Sterm_2065 NMT1/THI5 like domain protein.
 
  
 0.561
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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