STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecfA2ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (281 aa)    
Predicted Functional Partners:
ecfT
Cobalt transport protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
Cthe_0061
PFAM: BioY protein; KEGG: cby:CLM_1052 BioY family protein.
  
 0.963
Cthe_1802
KEGG: hmo:HM1_3001 cobalt abc transporter, permease protein CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein.
 
 
 0.897
Cthe_1761
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0469 protein of unknown function DUF214.
 
 
    0.880
Cthe_1803
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: hmo:HM1_3002 cobalamin biosynthesis protein CbiM.
 
 
 0.845
ecfA1
ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
0.839
Cthe_1500
ABC transporter transmembrane region; KEGG: bfs:BF2979 putative ABC transport system, membrane protein; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
     
0.816
Cthe_2964
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0047 binding-protein-dependent transport systems inner membrane component.
 
      0.778
Cthe_3154
KEGG: ate:Athe_1767 protein of unknown function DUF1393.
 
 
 
 0.752
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.719
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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