STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3006ErfK/YbiS/YcfS/YnhG family protein; KEGG: aoe:Clos_1944 peptidoglycan-binding LysM; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM. (289 aa)    
Predicted Functional Partners:
Cthe_0557
PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_0567 polysaccharide deacetylase.
 
  
 0.872
Cthe_3007
KEGG: peptidoglycan-binding lysin domain protein; PFAM: Peptidoglycan-binding lysin domain; ErfK/YbiS/YcfS/YnhG family protein; SMART: Peptidoglycan-binding LysM.
 
   
0.788
Cthe_3008
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
    0.496
Cthe_2064
KEGG: germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
    0.478
Cthe_1849
PFAM: Heavy metal transport/detoxification protein; KEGG: cce:Ccel_0745 heavy metal transport/detoxification protein.
 
     0.432
Cthe_1074
Delta-lactam-biosynthetic de-N-acetylase; KEGG: cce:Ccel_0571 polysaccharide deacetylase; TIGRFAM: delta-lactam-biosynthetic de-N-acetylase; PFAM: polysaccharide deacetylase.
 
  
 0.417
Cthe_3005
KEGG: amt:Amet_4134 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
0.416
Cthe_1427
PFAM: branched-chain amino acid transport; KEGG: cbt:CLH_2217 branched-chain amino acid transport.
  
    0.404
Cthe_2351
KEGG: cbh:CLC_2819 hypothetical protein.
   
    0.400
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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