STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3047KEGG: aoe:Clos_2576 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain. (470 aa)    
Predicted Functional Partners:
Cthe_3046
PFAM: cell cycle protein; KEGG: aoe:Clos_2577 cell cycle protein; Belongs to the SEDS family.
 
 0.998
Cthe_0983
KEGG: cce:Ccel_0474 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; Belongs to the SEDS family.
 
 0.987
Cthe_0975
KEGG: cce:Ccel_0482 cell division protein FtsW; TIGRFAM: stage V sporulation protein E; cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family.
 
 0.985
Cthe_3045
KEGG: aoe:Clos_2578 FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein.
 
  
 0.933
Cthe_0442
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
 
 0.815
Cthe_0089
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.758
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
  
 0.676
Cthe_1760
TIGRFAM: penicillin-binding protein, 1A family; KEGG: cce:Ccel_2876 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
 
 
0.652
Cthe_1894
KEGG: dhd:Dhaf_0962 cell division membrane protein-like protein.
 
 
 0.650
murC
UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
 
 0.645
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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