STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3053KEGG: ava:Ava_1697 hypothetical protein. (185 aa)    
Predicted Functional Partners:
Cthe_3052
TIGRFAM: YD repeat protein; PFAM: Kelch repeat type 1-containing protein; YD repeat-containing protein; MORN variant repeat-containing protein; KEGG: lmh:LMHCC_2776 YD repeat protein; SMART: Kelch repeat type 1-containing protein.
  
    0.798
Cthe_3054
Hypothetical protein; KEGG: ele:Elen_2720 (p)ppGpp synthetase I, SpoT/RelA.
       0.509
Cthe_0511
Histidine kinase; KEGG: cbe:Cbei_3405 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
   
    0.400
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.