STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3076PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_1782 radical SAM domain protein. (430 aa)    
Predicted Functional Partners:
Cthe_1309
Radical SAM domain protein; KEGG: shi:Shel_18370 predicted Fe-S oxidoreductase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.735
Cthe_0533
KEGG: amt:Amet_1039 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Elongator protein 3/MiaB/NifB; Tetratricopeptide repeat.
  
     0.732
Cthe_1688
KEGG: ate:Athe_1970 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.681
Cthe_2556
PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_4173 radical SAM domain protein.
  
    0.643
Cthe_2552
KEGG: dhd:Dhaf_4172 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.599
Cthe_1695
KEGG: dth:DICTH_0222 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.562
Cthe_2553
KEGG: dhd:Dhaf_4175 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.558
Cthe_3067
KEGG: ctc:CTC01492 membrane spanning protein.
  
    0.532
Cthe_2551
PFAM: Radical SAM domain protein; KEGG: dhd:Dhaf_4173 radical SAM domain protein.
  
     0.525
Cthe_3074
Cof-like hydrolase; KEGG: cbk:CLL_A0068 HAD superfamily hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3.
  
    0.466
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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