STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3119PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: flavin reductase domain protein FMN-binding protein. (220 aa)    
Predicted Functional Partners:
Cthe_1485
SMART: beta-lactamase domain protein; KEGG: aoe:Clos_0139 beta-lactamase domain-containing protein.
 
  
 0.955
Cthe_0200
PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; KEGG: ate:Athe_2358 FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 
 0.943
Cthe_0860
PFAM: Rubrerythrin; KEGG: cby:CLM_1500 rubrerythrin.
 
  
 0.942
Cthe_3120
KEGG: cbl:CLK_0631 pyruvate ferredoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein.
  
  
 0.781
Cthe_1946
PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Thioredoxin domain-containing protein; KEGG: chy:CHY_0560 thioredoxin/thioredoxin-disulfide reductase.
  
  
 0.737
Cthe_3118
KEGG: cbe:Cbei_2338 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein.
  
    0.699
Cthe_1771
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cpy:Cphy_3121 rubrerythrin.
 
  
 0.693
Cthe_1965
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.632
Cthe_0135
PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase.
  
  
 0.577
Cthe_1461
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: amt:Amet_4663 FAD dependent oxidoreductase.
  
  
 0.576
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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