STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3174KEGG: cce:Ccel_2085 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Cthe_3175
PFAM: protein of unknown function DUF421; KEGG: protein of unknown function DUF421.
 
    0.946
Cthe_1262
KEGG: cce:Ccel_1461 hypothetical protein.
  
     0.655
Cthe_3173
PFAM: sodium/calcium exchanger membrane region; KEGG: cce:Ccel_2086 sodium/calcium exchanger membrane region.
  
    0.620
Cthe_2071
KEGG: cce:Ccel_3340 sporulation protein YtxC; TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC.
  
    0.615
Cthe_0359
PFAM: protein of unknown function DUF1113; KEGG: cce:Ccel_2214 hypothetical protein.
  
    0.606
Cthe_1300
KEGG: tex:Teth514_2182 hypothetical protein.
  
    0.587
Cthe_0332
TGS domain-containing protein; KEGG: cce:Ccel_1435 AAA ATPase; PFAM: TGS domain-containing protein; SMART: AAA ATPase.
 
     0.535
Cthe_2091
KEGG: cce:Ccel_0172 hypothetical protein.
  
    0.527
Cthe_0154
PFAM: protein of unknown function DUF1292; KEGG: cce:Ccel_2238 protein of unknown function DUF1292; Belongs to the UPF0473 family.
  
     0.513
Cthe_3197
PFAM: PRC-barrel domain protein; KEGG: cce:Ccel_1194 PRC-barrel domain protein.
  
    0.502
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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