STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3175PFAM: protein of unknown function DUF421; KEGG: protein of unknown function DUF421. (227 aa)    
Predicted Functional Partners:
Cthe_3174
KEGG: cce:Ccel_2085 hypothetical protein.
 
    0.946
Cthe_0667
PFAM: GerA spore germination protein; KEGG: cce:Ccel_0521 GerA spore germination protein.
 
  
 0.635
Cthe_0122
KEGG: cce:Ccel_2282 stage V sporulation protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
 
  
 0.632
Cthe_2062
PFAM: GerA spore germination protein; KEGG: GerA spore germination protein.
 
  
 0.625
Cthe_0123
KEGG: cce:Ccel_2281 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
  
 0.587
Cthe_0124
KEGG: cce:Ccel_2280 stage V sporulation protein AE; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein.
 
  
 0.571
Cthe_0691
KEGG: cce:Ccel_1744 sporulation protein YtfJ; TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ.
  
    0.560
Cthe_1021
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.550
Cthe_2415
KEGG: cce:Ccel_0035 spore cortex-lytic enzyme; TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein.
  
    0.477
Cthe_2659
KEGG: cce:Ccel_3083 sporulation protein YabP; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein.
  
     0.476
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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