STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3178PFAM: protein of unknown function DUF342; KEGG: cce:Ccel_0028 protein of unknown function DUF342. (529 aa)    
Predicted Functional Partners:
Cthe_0126
PFAM: CheC domain protein; KEGG: cce:Ccel_2279 CheC domain protein.
  
     0.735
Cthe_1061
PFAM: Protein of unknown function DUF2225; KEGG: cce:Ccel_1682 hypothetical protein.
 
    0.729
Cthe_2247
KEGG: cce:Ccel_0091 regulatory protein, MerR.
 
     0.718
Cthe_0883
KEGG: cce:Ccel_0091 regulatory protein, MerR.
 
    0.712
Cthe_0488
PFAM: type IV pilus assembly PilZ; KEGG: tpd:Teth39_1234 type IV pilus assembly PilZ.
 
    0.711
Cthe_0486
TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: cce:Ccel_2030 GTP-binding signal recognition particle SRP54 G-domain protein; SMART: AAA ATPase.
 
  
 0.702
Cthe_0477
KEGG: cce:Ccel_2039 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein.
 
    0.693
Cthe_2622
PFAM: Flagellar protein FlgJ-like; KEGG: cce:Ccel_3099 hypothetical protein.
  
    0.693
Cthe_0471
PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: cce:Ccel_2045 flagellar hook-length control protein.
 
   
 0.689
Cthe_2308
PFAM: CheC domain protein; KEGG: nth:Nther_0634 CheC domain protein.
  
    0.669
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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