STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3401Hypothetical protein. (49 aa)    
Predicted Functional Partners:
Cthe_2473
PFAM: Terminase small subunit; KEGG: chy:CHY_1681 prophage LambdaCh01, terminase, small subunit.
       0.664
Cthe_2474
KEGG: chy:CHY_1680 prophage LambdaCh01, PBSX family terminase large subunit; TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: terminase large subunit.
       0.664
Cthe_2475
KEGG: cbi:CLJ_B1814 phage portal protein, SPP1 family; TIGRFAM: phage portal protein, SPP1 family; PFAM: Bacteriophage portal protein, SPP1 Gp6-like.
       0.630
Cthe_2472
KEGG: protein phosphatase 2C.
       0.572
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.