STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_3402KEGG: ppe:PEPE_0804 hypothetical protein; TIGRFAM: phage uncharacterized protein, XkdX family; PFAM: uncharacterised protein XkdX. (50 aa)    
Predicted Functional Partners:
Cthe_2494
KEGG: dhd:Dhaf_1423 hypothetical protein.
       0.773
Cthe_2495
PFAM: NHL repeat containing protein; KEGG: mpl:Mpal_0423 NHL repeat containing protein.
       0.773
Cthe_2496
KEGG: cbi:CLJ_B1415 hypothetical protein.
       0.773
Cthe_2488
TIGRFAM: phage tape measure protein; KEGG: str:Sterm_1441 phage tape measure protein.
       0.762
Cthe_2489
KEGG: cbo:CBO1738 phage protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
       0.762
Cthe_2490
Phage protein; KEGG: gym:GYMC10_5379 phage protein.
       0.762
Cthe_2491
PFAM: Phage-like element PBSX protein, XkdS; KEGG: cby:CLM_2642 hypothetical protein.
       0.762
Cthe_2492
PFAM: Baseplate J family protein; KEGG: dhd:Dhaf_1421 baseplate J family protein.
       0.762
Cthe_2493
KEGG: bsu:BSU12740 conserved hypothetical protein; putative PBSX prophage protein.
       0.762
Cthe_3454
Phage protein.
       0.762
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.