STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0145A-glycosyltransferase-like protein. (414 aa)    
Predicted Functional Partners:
Sde_0144
A-glycosyltransferase-like protein.
     0.852
Sde_0143
A-glycosyltransferase-like protein.
     0.820
Sde_0132
Polysaccharide export protein.
 
  
 0.769
Sde_0138
Conserved hypothetical protein.
 
     0.769
Sde_0146
Asparagine synthase, glutamine-hydrolyzing.
 
  
 0.765
Sde_0152
O-antigen polymerase.
 
  
 0.765
ces4B
Polysaccharide deacetylase-like protein.
 
     0.727
Sde_0140
Hypothetical protein.
 
   
 0.725
Sde_0147
A-glycosyltransferase-like protein.
 
     0.707
Sde_0131
Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.654
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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