STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0179Transcriptional regulator, AraC family. (388 aa)    
Predicted Functional Partners:
Sde_0180
Transcriptional regulator, AraC family.
 
    
0.790
man5Q
Putative retaining b-glycosidase.
  
     0.641
Sde_2274
Transcriptional regulator, AraC family.
  
     0.601
Sde_2542
TonB-dependent receptor, plug.
  
     0.574
ces2A
Acetyl xylan esterase-like protein.
  
     0.564
Sde_2642
Transcriptional regulator, AraC family.
  
     0.560
cel5C
Endoglucanase-like protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.521
Sde_1550
Transcriptional regulator, AraC family.
  
     0.514
Sde_3031
Transcriptional regulator, AraC family.
  
     0.437
Sde_2424
Hypothetical protein.
  
     0.412
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.