STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0306Two component, sigma54 specific, transcriptional regulator, Fis family. (457 aa)    
Predicted Functional Partners:
Sde_0305
ATP-binding region, ATPase-like protein.
 
 
 0.926
Sde_3179
Sigma-54, DNA-binding; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.776
Sde_0309
Secretion protein HlyD.
 
     0.703
Sde_0307
Protein of unknown function DUF214.
 
     0.667
Sde_3120
ATP-binding region, ATPase-like protein.
  
 
 0.640
Sde_0326
ATP-binding region, ATPase-like protein.
 
 
 0.635
Sde_3046
MCP methyltransferase, CheR-type; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.600
Sde_0308
ABC transporter related.
       0.594
rlmF
Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA.
       0.524
Sde_0500
PAS/PAC sensor signal transduction histidine kinase.
 
 0.516
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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