STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0307Protein of unknown function DUF214. (810 aa)    
Predicted Functional Partners:
Sde_0308
ABC transporter related.
 
 
 0.967
Sde_0309
Secretion protein HlyD.
 
  
 0.961
Sde_0305
ATP-binding region, ATPase-like protein.
 
     0.895
Sde_0329
ABC transporter related.
 
 
 0.835
Sde_0328
Secretion protein HlyD.
 
  
 0.757
Sde_2280
ABC transporter related.
 
 
 0.734
Sde_0306
Two component, sigma54 specific, transcriptional regulator, Fis family.
 
     0.667
Sde_1757
ABC transporter related.
 
 
 0.589
Sde_1968
Phage integrase.
  
     0.583
Sde_3234
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.541
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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