STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cel5CEndoglucanase-like protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (451 aa)    
Predicted Functional Partners:
cep94A
Cellobiose phosphorylase.
  
  
 0.927
cel6A
Putative cellobiohydrolase, non-reducing end; Belongs to the glycosyl hydrolase family 6.
  
 
  0.921
ces2A
Acetyl xylan esterase-like protein.
 
     0.820
ces2C
Acetyl xylan esterase-like protein.
 
     0.813
rgl11A
Putative rhamnogalacturonan lyase.
  
    0.753
arb43G
Putative bifunctional xylanase/a-L-arabinofuranosidase.
 
  
 0.742
pel9A
Putative pectate lyase.
 
     0.736
ces2B
Acetyl xylan esterase-like protein.
 
     0.735
man26A
Putative endo-b-1,4-mannanase; Belongs to the glycosyl hydrolase 26 family.
   
 0.725
pel3A
Putative pectate lyase.
  
    0.721
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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