STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbm32APutative carbohydrate-binding protein. (1028 aa)    
Predicted Functional Partners:
Sde_0345
Imelysin. Metallo peptidase. MEROPS family M75.
 
    0.822
chi18A
Chitinase. Glycosyl Hydrolase family 18; Reference: Howard, et al. 2003. Genomic analysis and initial characterization of the chitinolytic system of Microbulbifer degradans strain 2-40. J Bacteriology 185(3352-3360); Belongs to the glycosyl hydrolase 18 family.
  
     0.642
cbm6F
peptidyl-Asp metallopeptidase. Metallo peptidase. MEROPS family M72.
 
     0.585
cbm2B
Cellulose-binding protein; Reference: Taylor, et al. 2006. Complete Cellulase System in the Marine Bacterium Saccharophagus degradans Starin 2-40T. Journal of Bacteriology; Belongs to the UPF0312 family.
  
     0.537
Sde_2374
Protein of unknown function DUF1552.
  
     0.525
cbm2E
Putative cellulose-binding protein.
  
     0.507
lam16E
Putative retaining b-glycosidase.
 
     0.504
Sde_3028
Periplasmic protein-like protein.
   
    0.502
Sde_2049
Cell surface receptor IPT/TIG.
  
     0.486
cel5E
Putative retaining b-glycosidase.
  
     0.470
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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