STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arb43HPutative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (577 aa)    
Predicted Functional Partners:
arb43I
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.907
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.845
gly2D
Putative retaining b-glycosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.842
Sde_1755
Hypothetical protein.
     0.802
uxaC
Glucuronate isomerase.
    
  0.800
uxaC-2
Glucuronate isomerase.
    
  0.800
arb43J
b-D-glycosidase/a-L-glycosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.789
xyn10C
Putative xylanase.
   
 0.786
arb43K
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.760
agu67A
Putative a-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
   
 0.735
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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