STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0803Hypothetical protein. (457 aa)    
Predicted Functional Partners:
Sde_0565
Protein of unknown function DUF1593.
  
     0.554
ces1C
Esterase-like protein.
  
     0.537
Sde_0722
Transcriptional regulator, Crp/Fnr family.
  
   
 0.497
Sde_2986
Hypothetical protein.
  
     0.484
Sde_2545
NAD-dependent epimerase/dehydratase.
  
    0.441
Sde_0802
Transcriptional regulator, AraC family.
       0.430
Sde_1649
Acyltransferase 3.
  
     0.430
Sde_1709
Conserved hypothetical protein.
 
   
 0.416
cbm6D
Putative polysaccharide-binding protein.
  
     0.404
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.