STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0804Transcriptional regulator, GntR family. (240 aa)    
Predicted Functional Partners:
Sde_1768
Transcriptional regulator, GntR family.
  
  
 0.761
Sde_3282
Major facilitator superfamily MFS_1.
 
   
 0.638
alg17A
Putative alginate lyase; Catalyzes the depolymerization of alginate through an exolytic mode of action, via a beta-elimination mechanism. Preferentially acts on oligoalginates with degrees of polymerization higher than 2 to produce the alginate monomer, 4-deoxy-L-erythro-5- hexoseulose uronic acid.
 
     0.561
ply6E
Putative polysaccharide lyase.
  
     0.547
Sde_2487
Regulatory protein, IclR.
 
  
 0.534
ply6D
Putative polysaccharide lyase.
  
     0.518
Sde_1258
Transcriptional regulator, IclR family.
 
  
 0.500
alg6A
Putative modular alginate lyase; Three catalytic domains.
  
     0.452
ply6C
Putative polysaccharide lyase.
  
     0.416
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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