Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0899Flavodoxin/nitric oxide synthase; Belongs to the WrbA family. (199 aa)    
Predicted Functional Partners:
Sde_3518
NADPH-dependent FMN reductase.
  
  
 
0.926
ubiE
2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
Sde_0900
Arsenate reductase.
  
    0.825
Sde_0898
Hypothetical protein.
       0.815
Sde_0897
Signal peptide peptidase SppA, 67K type.
       0.711
Sde_0665
Ferritin and Dps; Belongs to the Dps family.
  
  
 0.676
Sde_0733
Putative serine protein kinase, PrkA.
   
    0.557
Sde_0901
tRNA-processing RNAse BN.
       0.521
Sde_1985
Ferritin and Dps; Belongs to the Dps family.
  
  
 0.492
Sde_0830
Catalase.
   
  
 0.434
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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