STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ply1GPectin/pectate lyase-like protein. (473 aa)    
Predicted Functional Partners:
Sde_0951
Unsaturated uronyl hydrolase-like protein.
 
     0.880
ces8B
Pectin methylesterase-like protein.
   
 0.877
pgl28A
Polygalacturonase-like protein; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.810
Sde_0949
Short-chain dehydrogenase/reductase SDR.
 
     0.803
ces12A
Transcriptional regulator, GntR family.
  
     0.769
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
       0.737
Sde_1281
Hypothetical protein.
 
     0.734
Sde_2808
Unsaturated uronyl hydrolase-like protein.
 
     0.731
pel1D
Putative pectin/pectate lyase.
  
     0.649
rgl11A
Putative rhamnogalacturonan lyase.
  
     0.624
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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