STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_1048Hypothetical protein. (512 aa)    
Predicted Functional Partners:
Sde_1047
Hypothetical protein.
 
     0.951
Sde_1049
AAA ATPase, central region.
 
 
 0.924
Sde_1046
Conserved hypothetical protein.
 
   
 0.908
Sde_1045
Conserved hypothetical protein.
 
   
 0.905
Sde_1044
GPW/gp25.
 
     0.900
Sde_1050
Hypothetical protein.
 
     0.893
Sde_1043
PAAR.
 
     0.891
Sde_1042
Rhs element Vgr protein.
 
     0.879
Sde_1041
Conserved hypothetical protein.
 
     0.869
Sde_1040
Conserved hypothetical protein.
 
     0.848
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.