Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sde_1087 | Sde_2024 | Sde_1087 | Sde_2024 | Peptidase M23B. | Putative lytic murein transglycosylase. | 0.570 |
Sde_1087 | Sde_2670 | Sde_1087 | Sde_2670 | Peptidase M23B. | N-acetylmuramoyl-L-alanine amidase. | 0.670 |
Sde_1087 | Sde_2692 | Sde_1087 | Sde_2692 | Peptidase M23B. | Putative bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase; Candidate murein polymerase. | 0.483 |
Sde_1087 | anmK | Sde_1087 | Sde_1086 | Peptidase M23B. | Protein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | 0.775 |
Sde_1087 | tyrS | Sde_1087 | Sde_1088 | Peptidase M23B. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.526 |
Sde_1087 | uppP | Sde_1087 | Sde_2232 | Peptidase M23B. | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.595 |
Sde_2024 | Sde_1087 | Sde_2024 | Sde_1087 | Putative lytic murein transglycosylase. | Peptidase M23B. | 0.570 |
Sde_2024 | Sde_2670 | Sde_2024 | Sde_2670 | Putative lytic murein transglycosylase. | N-acetylmuramoyl-L-alanine amidase. | 0.625 |
Sde_2024 | Sde_2692 | Sde_2024 | Sde_2692 | Putative lytic murein transglycosylase. | Putative bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase; Candidate murein polymerase. | 0.623 |
Sde_2670 | Sde_1087 | Sde_2670 | Sde_1087 | N-acetylmuramoyl-L-alanine amidase. | Peptidase M23B. | 0.670 |
Sde_2670 | Sde_2024 | Sde_2670 | Sde_2024 | N-acetylmuramoyl-L-alanine amidase. | Putative lytic murein transglycosylase. | 0.625 |
Sde_2670 | Sde_2692 | Sde_2670 | Sde_2692 | N-acetylmuramoyl-L-alanine amidase. | Putative bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase; Candidate murein polymerase. | 0.435 |
Sde_2692 | Sde_1087 | Sde_2692 | Sde_1087 | Putative bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase; Candidate murein polymerase. | Peptidase M23B. | 0.483 |
Sde_2692 | Sde_2024 | Sde_2692 | Sde_2024 | Putative bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase; Candidate murein polymerase. | Putative lytic murein transglycosylase. | 0.623 |
Sde_2692 | Sde_2670 | Sde_2692 | Sde_2670 | Putative bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase; Candidate murein polymerase. | N-acetylmuramoyl-L-alanine amidase. | 0.435 |
anmK | Sde_1087 | Sde_1086 | Sde_1087 | Protein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | Peptidase M23B. | 0.775 |
anmK | tyrS | Sde_1086 | Sde_1088 | Protein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.563 |
tyrS | Sde_1087 | Sde_1088 | Sde_1087 | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | Peptidase M23B. | 0.526 |
tyrS | anmK | Sde_1088 | Sde_1086 | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | Protein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | 0.563 |
uppP | Sde_1087 | Sde_2232 | Sde_1087 | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | Peptidase M23B. | 0.595 |