Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sde_1131 | Sde_1132 | Conserved hypothetical protein. | Fimbrial assembly. | 0.960 |
Sde_1131 | Sde_1133 | Conserved hypothetical protein. | Hypothetical protein. | 0.960 |
Sde_1131 | Sde_1134 | Conserved hypothetical protein. | Hypothetical protein. | 0.773 |
Sde_1131 | Sde_1135 | Conserved hypothetical protein. | Type II and III secretion system protein. | 0.914 |
Sde_1131 | Sde_1136 | Conserved hypothetical protein. | Type II secretory pathway, component ExeA (predicted ATPase). | 0.735 |
Sde_1131 | Sde_1137 | Conserved hypothetical protein. | Hypothetical protein. | 0.515 |
Sde_1131 | Sde_1138 | Conserved hypothetical protein. | Type II secretion system protein E. | 0.779 |
Sde_1131 | Sde_1139 | Conserved hypothetical protein. | Type II secretion system protein. | 0.783 |
Sde_1131 | Sde_1140 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.551 |
Sde_1131 | Sde_1141 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.851 |
Sde_1132 | Sde_1131 | Fimbrial assembly. | Conserved hypothetical protein. | 0.960 |
Sde_1132 | Sde_1133 | Fimbrial assembly. | Hypothetical protein. | 0.793 |
Sde_1132 | Sde_1134 | Fimbrial assembly. | Hypothetical protein. | 0.773 |
Sde_1132 | Sde_1135 | Fimbrial assembly. | Type II and III secretion system protein. | 0.599 |
Sde_1132 | Sde_1136 | Fimbrial assembly. | Type II secretory pathway, component ExeA (predicted ATPase). | 0.531 |
Sde_1132 | Sde_1137 | Fimbrial assembly. | Hypothetical protein. | 0.512 |
Sde_1132 | Sde_1138 | Fimbrial assembly. | Type II secretion system protein E. | 0.658 |
Sde_1132 | Sde_1139 | Fimbrial assembly. | Type II secretion system protein. | 0.651 |
Sde_1132 | Sde_1140 | Fimbrial assembly. | Conserved hypothetical protein. | 0.557 |
Sde_1132 | Sde_1141 | Fimbrial assembly. | Conserved hypothetical protein. | 0.407 |
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